The story takes place on an island, where a "Fractale System" is beginning to collapse. One day, Clain finds an injured girl called Phryne under a cliff. She disappears leaving a pendant. Clain sets out for a journey with the girl-shaped avatar Nessa to look for Phryne and discovers the secret of the Fractale System.

Upon meeting for the first time, undefeated street fighter Marcus Damon and renegade Digimon Agumon become friends in the most natural way possible for the knuckleheaded duo—by fighting their hearts out. The self-proclaimed "ultimate team" are recruited by a secret government organization called the Digimon Data Squad, or DATS, who had witnessed an unbelievable human fighting blow for blow with a Digimon. Their primary objective is investigating mysterious problems caused by Digimon entering the real world, and the world is currently in the midst of a crisis with Digimon appearing at an unprecedented rate. Embarking on various missions with DATS, Marcus and Agumon become colleagues with adolescent genius Thomas H. Norstein and his Digimon partner Gaoman, along with the kind-hearted Yoshino "Yoshi" Fujeda and her Digimon partner Lalamon. As the group continues to investigate the rapid increase of Digimon in their world, a darker truth begins to surface, and it is up to Marcus, Agumon, and their friends to get to the bottom of things. [Written by MAL Rewrite]

In the year 2020, technology is everywhere. Every digital device around the world is connected by a singular network where data travels. Unbeknownst to humans, this network has become home to life forms known as "Digimon." Fifth-grader Taichi Yagami is preparing for summer camp when strange occurrences begin in Tokyo; certain electronic systems have started going haywire. When he discovers that his sister and mother are trapped on an unstoppable train, he rushes to the nearby station. Suddenly, Taichi is transported to another world where he meets a strange creature by the name of Agumon, who somehow already knows his name. Taichi also receives a strange device called a "Digivice," which allows him to communicate with the undigitized world. Taichi discovers he is in the "Network," and virus-like Digimon are attacking the areas that maintain Tokyo’s electronic systems. It is up to Taichi and his new partner Agumon to stop these cyberattacks before the whole world is threatened by the actions of mischievous Digimon.

Most people, including the girl herself, would say that first year high school student Yamada is beautiful and perfect. Despite this, she is working towards a peculiar goal: to have sex with one hundred men by the end of high school. Trying to put some sense into her head, Yamada's best friend, Miharu Takeshita, points out a major flaw in that plan—she is completely inexperienced with men. However, the reason behind this is that Yamada thinks her lady parts look strange and believes others will judge her for it. As a result, Yamada decides that her first time must be with a fellow virgin, since they will not hurt or scare her. After a fateful encounter, she sets her sights on the shy and average Takashi Kosuda, an aspiring photographer with a heart of gold. With contending rivals for his affection and her own raging hormones, Yamada must find ways to seduce Kosuda and take his cherry. However, as she gets closer to Kosuda, she finds herself increasingly enjoying their time spent together. [Written by MAL Rewrite]