Second season of .

Several years after The Fruit of Grisaia... What was once "Mihama Academy," a sanctuary for young girls, has now been transformed into a SORD (Special Organization for Research & Development) training school dedicated to fostering talent for national defense. Rena and Maki specialize in firearms, Tohka and Gumi excel at sniping, Chris handles explosives and data processing, and Murasaki is a skilled ninja for intelligence operations. Together, they take on cases too complex for the police or Self-Defense Forces, repeatedly facing dangerous missions. This is the story of these young girls, painted in blood and gunpowder.

A 30-year-old man who dreams of becoming a wizard suddenly loses his life. Reincarnated in another world as a young child named Shion, he grows up alongside Marie, his dependable older sister who adores him. Shion eagerly anticipates using magical powers, but he discovers that the new world seemingly does not have any magic. He spends the ensuing years as a gloomy and dejected child until a mystical phenomenon at a nearby lake catches the siblings' attention and breathes life back into his magical dream. While experimenting on the peculiar light emanating from the water, Shion finally confirms that magical energy really exists. It may not be convenient for anything just yet, but Shion devotes his time to studying the anomaly, determined to uncover all the existing wonders in his quest to make magic.

Goddess Festival—A fruit festival that brings the labyrinth city of Orario to life. Goddesses symbolizing fertility are enshrined on the altar, and among them is the Goddess of Beauty. Bell Cranel, who has survived and returned to his daily life from the dead depths of the dungeon, is here and ready to enjoy the bustle of the Goddess Festival until he receives a letter from a girl at a small bar in a corner of Orario—"To Mr. Bell, please go on a date with just the two of us at the upcoming Goddess Festival. From Syr." Syr's single-minded determination will drive both Bell and the labyrinth city crazy. Meanwhile, the Einherjar, the warriors who claim to be the "strongest," are now suddenly on the move...