In the year 3990, the immortal Oldna Poseidal rules Pentagona, a war-torn solar system of five planets. Daba Myroad is a survivor of the Yaman Clan, just one of numerous native societies nearly wiped out by the tyrant. Living on the remote planet Koam with his friend Mirao Kyao, Daba possesses L-Gaim, a humanoid mecha known commonly as a "Heavy Metal" and the last known relic of the Yaman Clan. The pair befriend Fanneria Amu, an aspiring actress, and Lilith Fau, the last surviving fairy in Pentagona while on the run from a band of thieves attempting to steal L-Gaim. Daba promises to fulfill the dying wish of one of the thieves hunting him—an honorable act that leads him to the powerful merchant Amandara Kamandara. With their mission in sight, the ragtag group will face powerful adversaries and become entangled in a rebellion against Poseidal's reign.

Jiyu Nanohana is an ordinary schoolgirl until she runs across a scatterbrained 300 year old samurai who tells her that she is the reincarnation of Yagyu Jubei. With the help of the "Lovely Eyepatch" she transforms into the legendary swordsman whenever she needs to use his awesome fighting ability, which she needs to do quite often as a rival clan is dead set on conquering Yagyu to satisfy an old family grudge.

The series focuses on the main heroine Chiari Tsukikage and her friends on managing the Jewelpet Cafe. One day at the magical world of Jewel Land, Lady Jewelina entrusted Ruby the Magical Jewel Box with a mission to make friends and collect Magic Jewels. At the same time she needs to attend the Jewel Academy to do so and open a shop called the Jewelpet Cafe. However with her friends, things didn't go well as planned with several failed mishaps happened to her and the students being scared, in the point of Ruby giving up. But when she met a young girl named Chiari Tsukikage and decides to help, Ruby's life is about to change forever. Now, she and her friends now must work together for the cafe to prosper, stick together through good and bad luck as well as protecting the Jewel Box from being stolen.

Short specials included in the Blu-ray/DVD releases.